Kawabata T. (2010).
"Detection of multi-scale pockets on protein surfaces using mathematical morphology"
Proteins,
78,1195-1121.
[PubMed][Link to GHECOM server]
Kawabata T. (2008).
"Multiple subunit
fitting into a low-resolution density map of a macromolecular complex using
Gaussian mixture model".
Biophysical Journal, 95,4643-4658.
[PubMed]
Fukuhara N., Kawabata T. (2008).
"HOMCOS: A server to predict interacting protein pairs and interacting sites by homology modeling of complex structures".
Nucleic Acids Research, 36, Web server issue, W185-W189.
[PubMed]
[Nucl.Acids Res.]
Fukuhara N., Go N., Kawabata T. (2007).
"Prediction of Interacting Proteins from Homology-modeled Complex
Structures Using Sequence and Structure Scores", BIOPHYSICS, Vol.3, pp 13.
Kawabata T, Go N. (2007)
"Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites". Proteins, 68,516-529.
[PubMed]
Uehara K, Kawabata T, Go N.(2004).
"Filtering remote homologues using predicted structural information".
Protein Eng Des Sel., 17, 565-570.
[PubMed]
Kawabata,T. (2003) "MATRAS: A Program for Protein 3D Structure Comparison",
Nucleic Acids Research, Vol. 31, pp. 3367-3369
[PubMed].
Kawabata,T., Fukuchi,S., Homma, K., Ota,M., Araki,J., Ito,T., Ichiyoshi, N. and Nishikawa, K.(2002)
"
GTOP:a database of protein structures predicted from genome sequences" Nucl. Acids Res., Vol.30, pp.294-298.
[PubMed]
Kawabata,T. and Nishikawa,K. (2000) "Protein structure comparison using the Markov transition model of evolution," Proteins, Vol 41, pp. 108-122.
[PubMed]
Kawabata, T., Arisaka, F., and Nishikawa, K.(2000) "Structural/functional assignment of unknown bacteriophage T4 proteins by iterative database searches," Genes, Vol.259, pp. 223-233.
[PubMed]
Kawabata,T., Ota,M., and Nishikawa,K. (1999) "The Protein Mutant Database"
Nucleic Acids Research, Vol 27, 355-357.
[PubMed][Go to PMD page]
Ota M., Kawabata T., Kinjo,R.A., Nishikawa,K.(1999)
"Cooperative Approach for the Protein Fold Recognition"
Proteins Suppl.3:126-132
[PubMed]
Sagara,J., Shimizu,S., Kawabata,T., Nakamura,S.,
Ikeguchi,M., Shimizu,K.(1998)
"The use of sequence comparison to detect identities in tRNA genes"
Nucleic Acids Research, Vol 26, 1974-1979
[PubMed]
Kawabata, T. and Doi, J.(1997) "Improvement of Protein Secondary Structure Prediction Using Binary Word Encoding", Proteins, Vol 27, pp. 36-46.
[PubMed]
発表論文(実験研究者との共同研究)
Tsubota T, Tajima R, Ode K, Kubota H, Fukuhara N, Kawabata T, Maki S, Maki H. "Double-stranded DNA binding, an unusual property of DNA polymerase epsilon , promotes epigenetic silencing in Saccharomyces cerevisiae".
J Biol Chem. 2006 Aug 16;
[PubMed]
Ohta T, Kawabata T, Nishikawa K, Tani A, Kimbara K, Kawai F.
"Analysis of amino acid residues involved in catalysis of polyethylene glycol dehydrogenase from Sphingopyxis terrae, using three-dimensional molecular modeling-based kinetic characterization of mutants".
Appl Environ Microbiol. 2006 Jun;72(6):4388-96.
[PubMed]
